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Class: AnatomicalEntity

A subcellular location, cell type or gross anatomical part

URI: data_sheets_schema:AnatomicalEntity

classDiagram class AnatomicalEntity NamedThing <|-- AnatomicalEntity AnatomicalEntity : category AnatomicalEntity : contribution_date AnatomicalEntity : contributor_github_name AnatomicalEntity : contributor_name AnatomicalEntity : contributor_orcid AnatomicalEntity : description AnatomicalEntity : id AnatomicalEntity : name AnatomicalEntity : related_to AnatomicalEntity --|> NamedThing : related_to AnatomicalEntity : subclass_of AnatomicalEntity --|> NamedThing : subclass_of

Inheritance

Slots

Name Cardinality and Range Description Inheritance
id 1..1
Uriorcurie		 A unique identifier for a thing NamedThing
category 0..1
CategoryType		 Name of the high level ontology class in which this entity is categorized NamedThing
name 0..1
String		 A human-readable name for a thing NamedThing
description 0..1
String		 A human-readable description for a thing NamedThing
subclass_of 0..*
NamedThing		 Holds between two classes where the domain class is a specialization of the r... NamedThing
related_to 0..*
NamedThing		 A relationship that is asserted between two named things NamedThing
contributor_name 0..1
String		 The name of the person who added this node NamedThing
contributor_github_name 0..1
String		 The name of the github user who added this node NamedThing
contributor_orcid 0..1
Uriorcurie		 The ORCiD of the person who added this node NamedThing
contribution_date 0..1
Date		 The date on which the node was added NamedThing

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

  • uberon

Schema Source

  • from schema: https://w3id.org/bridge2ai/data-sheets-schema

Mappings

Mapping Type Mapped Value
self data_sheets_schema:AnatomicalEntity
native data_sheets_schema:AnatomicalEntity
exact uberon:0001062, wikidata:Q4936952
narrow ncit:C12219

LinkML Source

Direct

name: AnatomicalEntity
id_prefixes:
- uberon
description: A subcellular location, cell type or gross anatomical part
from_schema: https://w3id.org/bridge2ai/data-sheets-schema
exact_mappings:
- uberon:0001062
- wikidata:Q4936952
narrow_mappings:
- ncit:C12219
is_a: NamedThing

Induced

name: AnatomicalEntity
id_prefixes:
- uberon
description: A subcellular location, cell type or gross anatomical part
from_schema: https://w3id.org/bridge2ai/data-sheets-schema
exact_mappings:
- uberon:0001062
- wikidata:Q4936952
narrow_mappings:
- ncit:C12219
is_a: NamedThing
attributes:
  id:
    name: id
    description: A unique identifier for a thing.
    from_schema: https://w3id.org/bridge2ai/data-sheets-schema
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: AnatomicalEntity
    domain_of:
    - Information
    - FormatDialect
    - NamedThing
    range: uriorcurie
    required: true
  category:
    name: category
    description: Name of the high level ontology class in which this entity is categorized.
      Corresponds to the label for the entity type class, e.g., "BiomedicalStandard".
    from_schema: https://w3id.org/bridge2ai/data-sheets-schema
    rank: 1000
    is_a: type
    domain: NamedThing
    designates_type: true
    alias: category
    owner: AnatomicalEntity
    domain_of:
    - NamedThing
    range: category_type
  name:
    name: name
    description: A human-readable name for a thing.
    from_schema: https://w3id.org/bridge2ai/data-sheets-schema
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: AnatomicalEntity
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: A human-readable description for a thing.
    from_schema: https://w3id.org/bridge2ai/data-sheets-schema
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: AnatomicalEntity
    domain_of:
    - Information
    - Relationships
    - Splits
    - DataAnomaly
    - Confidentiality
    - Deidentification
    - SensitiveElement
    - InstanceAcquisition
    - CollectionMechanism
    - DataCollector
    - CollectionTimeframe
    - EthicalReview
    - DirectCollection
    - CollectionNotification
    - CollectionConsent
    - ConsentRevocation
    - DataProtectionImpact
    - PreprocessingStrategy
    - CleaningStrategy
    - LabelingStrategy
    - RawData
    - ExistingUse
    - UseRepository
    - OtherTask
    - FutureUseImpact
    - DiscouragedUse
    - ThirdPartySharing
    - DistributionFormat
    - DistributionDate
    - LicenseAndUseTerms
    - IPRestrictions
    - ExportControlRegulatoryRestrictions
    - Maintainer
    - Erratum
    - UpdatePlan
    - RetentionLimits
    - VersionAccess
    - ExtensionMechanism
    - NamedThing
    range: string
  subclass_of:
    name: subclass_of
    description: Holds between two classes where the domain class is a specialization
      of the range class.
    from_schema: https://w3id.org/bridge2ai/data-sheets-schema
    exact_mappings:
    - rdfs:subClassOf
    - MESH:isa
    narrow_mappings:
    - rdfs:subPropertyOf
    rank: 1000
    is_a: related_to
    domain: NamedThing
    multivalued: true
    inherited: true
    alias: subclass_of
    owner: AnatomicalEntity
    domain_of:
    - NamedThing
    range: NamedThing
  related_to:
    name: related_to
    description: A relationship that is asserted between two named things.
    from_schema: https://w3id.org/bridge2ai/data-sheets-schema
    rank: 1000
    domain: NamedThing
    multivalued: true
    inherited: true
    alias: related_to
    owner: AnatomicalEntity
    domain_of:
    - Organization
    - NamedThing
    symmetric: true
    range: NamedThing
  contributor_name:
    name: contributor_name
    description: The name of the person who added this node.
    from_schema: https://w3id.org/bridge2ai/data-sheets-schema
    rank: 1000
    is_a: node_property
    domain: NamedThing
    alias: contributor_name
    owner: AnatomicalEntity
    domain_of:
    - NamedThing
    range: string
  contributor_github_name:
    name: contributor_github_name
    description: The name of the github user who added this node.
    from_schema: https://w3id.org/bridge2ai/data-sheets-schema
    rank: 1000
    is_a: node_property
    domain: NamedThing
    alias: contributor_github_name
    owner: AnatomicalEntity
    domain_of:
    - NamedThing
    range: string
  contributor_orcid:
    name: contributor_orcid
    description: The ORCiD of the person who added this node.
    examples:
    - value: ORCID:0000-0001-1234-5678
    from_schema: https://w3id.org/bridge2ai/data-sheets-schema
    rank: 1000
    is_a: node_property
    domain: NamedThing
    alias: contributor_orcid
    owner: AnatomicalEntity
    domain_of:
    - NamedThing
    range: uriorcurie
  contribution_date:
    name: contribution_date
    description: The date on which the node was added.
    examples:
    - value: '2023-03-20'
    from_schema: https://w3id.org/bridge2ai/data-sheets-schema
    rank: 1000
    is_a: node_property
    domain: NamedThing
    alias: contribution_date
    owner: AnatomicalEntity
    domain_of:
    - NamedThing
    range: date