Class: AnatomicalEntity

A subcellular location, cell type or gross anatomical part

URI: https://w3id.org/bridge2ai/standards-schema-all/AnatomicalEntity

classDiagram class AnatomicalEntity click AnatomicalEntity href "../AnatomicalEntity/" NamedThing <|-- AnatomicalEntity click NamedThing href "../NamedThing/" AnatomicalEntity : category AnatomicalEntity : contribution_date AnatomicalEntity : contributor_github_name AnatomicalEntity : contributor_name AnatomicalEntity : contributor_orcid AnatomicalEntity : description AnatomicalEntity : has_application AnatomicalEntity --> "*" Application : has_application click Application href "../Application/" AnatomicalEntity : id AnatomicalEntity : name AnatomicalEntity : related_to AnatomicalEntity --> "*" NamedThing : related_to click NamedThing href "../NamedThing/" AnatomicalEntity : subclass_of AnatomicalEntity --> "*" NamedThing : subclass_of click NamedThing href "../NamedThing/" AnatomicalEntity : used_in_bridge2ai

Inheritance

NamedThing
- AnatomicalEntity

Slots

Name	Cardinality and Range	Description	Inheritance
id	1 Uriorcurie	A unique identifier for a thing	NamedThing
category	0..1 CategoryType	CURIE for the high level ontology class in which this entity is categorized	NamedThing
name	0..1 String	A human-readable name for a thing	NamedThing
description	0..1 String	A human-readable description for a thing	NamedThing
subclass_of	* NamedThing	Holds between two classes where the domain class is a specialization of the r...	NamedThing
related_to	* NamedThing	A relationship that is asserted between two named things	NamedThing
contributor_name	0..1 String	The name of the person who added this node	NamedThing
contributor_github_name	0..1 String	The name of the github user who added this node	NamedThing
contributor_orcid	0..1 Uriorcurie	The ORCiD of the person who added this node	NamedThing
contribution_date	0..1 Date	The date on which the node was added	NamedThing
used_in_bridge2ai	0..1 Boolean	True if the entity is used, developed, or otherwise related to work in the Br...	NamedThing
has_application	* Application	A list of one or more specific applications of this entity to a specific purp...	NamedThing

Usages

used by	used in	type	used
DataTopic	topic_involves_anatomy	range	AnatomicalEntity
DataPart	anatomy	range	AnatomicalEntity

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

uberon
clo

Schema Source

from schema: https://w3id.org/bridge2ai/standards-schema-all

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/bridge2ai/standards-schema-all/AnatomicalEntity
native	https://w3id.org/bridge2ai/standards-schema-all/AnatomicalEntity
exact	uberon:0001062, wikidata:Q4936952
narrow	ncit:C12219

LinkML Source

Direct

name: AnatomicalEntity
id_prefixes:
- uberon
- clo
description: A subcellular location, cell type or gross anatomical part
from_schema: https://w3id.org/bridge2ai/standards-schema-all
exact_mappings:
- uberon:0001062
- wikidata:Q4936952
narrow_mappings:
- ncit:C12219
is_a: NamedThing

Induced

name: AnatomicalEntity
id_prefixes:
- uberon
- clo
description: A subcellular location, cell type or gross anatomical part
from_schema: https://w3id.org/bridge2ai/standards-schema-all
exact_mappings:
- uberon:0001062
- wikidata:Q4936952
narrow_mappings:
- ncit:C12219
is_a: NamedThing
attributes:
  id:
    name: id
    description: A unique identifier for a thing.
    from_schema: https://w3id.org/bridge2ai/standards-schema-all
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: AnatomicalEntity
    domain_of:
    - NamedThing
    range: uriorcurie
    required: true
  category:
    name: category
    description: CURIE for the high level ontology class in which this entity is categorized.
      Corresponds to the label for the entity type class, e.g., "B2AI_STANDARD:DataStandard".
    from_schema: https://w3id.org/bridge2ai/standards-schema-all
    rank: 1000
    is_a: type
    domain: NamedThing
    designates_type: true
    alias: category
    owner: AnatomicalEntity
    domain_of:
    - NamedThing
    range: category_type
  name:
    name: name
    description: A human-readable name for a thing.
    from_schema: https://w3id.org/bridge2ai/standards-schema-all
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: AnatomicalEntity
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: A human-readable description for a thing.
    from_schema: https://w3id.org/bridge2ai/standards-schema-all
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: AnatomicalEntity
    domain_of:
    - NamedThing
    range: string
  subclass_of:
    name: subclass_of
    description: Holds between two classes where the domain class is a specialization
      of the range class.
    from_schema: https://w3id.org/bridge2ai/standards-schema-all
    exact_mappings:
    - rdfs:subClassOf
    - MESH:isa
    narrow_mappings:
    - rdfs:subPropertyOf
    rank: 1000
    is_a: related_to
    domain: NamedThing
    inherited: true
    alias: subclass_of
    owner: AnatomicalEntity
    domain_of:
    - NamedThing
    range: NamedThing
    multivalued: true
  related_to:
    name: related_to
    description: A relationship that is asserted between two named things.
    from_schema: https://w3id.org/bridge2ai/standards-schema-all
    rank: 1000
    domain: NamedThing
    inherited: true
    alias: related_to
    owner: AnatomicalEntity
    domain_of:
    - NamedThing
    - Organization
    symmetric: true
    range: NamedThing
    multivalued: true
  contributor_name:
    name: contributor_name
    description: The name of the person who added this node.
    from_schema: https://w3id.org/bridge2ai/standards-schema-all
    rank: 1000
    is_a: node_property
    domain: NamedThing
    alias: contributor_name
    owner: AnatomicalEntity
    domain_of:
    - NamedThing
    range: string
  contributor_github_name:
    name: contributor_github_name
    description: The name of the github user who added this node.
    from_schema: https://w3id.org/bridge2ai/standards-schema-all
    rank: 1000
    is_a: node_property
    domain: NamedThing
    alias: contributor_github_name
    owner: AnatomicalEntity
    domain_of:
    - NamedThing
    range: string
  contributor_orcid:
    name: contributor_orcid
    description: The ORCiD of the person who added this node.
    examples:
    - value: ORCID:0000-0001-1234-5678
    from_schema: https://w3id.org/bridge2ai/standards-schema-all
    rank: 1000
    is_a: node_property
    domain: NamedThing
    alias: contributor_orcid
    owner: AnatomicalEntity
    domain_of:
    - NamedThing
    range: uriorcurie
  contribution_date:
    name: contribution_date
    description: The date on which the node was added.
    examples:
    - value: '2023-03-20'
    from_schema: https://w3id.org/bridge2ai/standards-schema-all
    rank: 1000
    is_a: node_property
    domain: NamedThing
    alias: contribution_date
    owner: AnatomicalEntity
    domain_of:
    - NamedThing
    range: date
  used_in_bridge2ai:
    name: used_in_bridge2ai
    description: True if the entity is used, developed, or otherwise related to work
      in the Bridge2AI consortium. If false, the entity is not explicitly related
      to Bridge2AI. If not specified, it is not known if the entity is related to
      Bridge2AI.
    from_schema: https://w3id.org/bridge2ai/standards-schema-all
    rank: 1000
    is_a: node_property
    domain: NamedThing
    alias: used_in_bridge2ai
    owner: AnatomicalEntity
    domain_of:
    - NamedThing
    range: boolean
  has_application:
    name: has_application
    description: A list of one or more specific applications of this entity to a specific
      purpose.
    from_schema: https://w3id.org/bridge2ai/standards-schema-all
    rank: 1000
    domain: NamedThing
    alias: has_application
    owner: AnatomicalEntity
    domain_of:
    - NamedThing
    range: Application
    multivalued: true
    inlined: true
    inlined_as_list: true