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Class: AnatomicalEntity

A subcellular location, cell type or gross anatomical part

URI: https://w3id.org/bridge2ai/standards-schema-all/:AnatomicalEntity

classDiagram class AnatomicalEntity NamedThing <|-- AnatomicalEntity AnatomicalEntity : category AnatomicalEntity : contribution_date AnatomicalEntity : contributor_github_name AnatomicalEntity : contributor_name AnatomicalEntity : contributor_orcid AnatomicalEntity : description AnatomicalEntity : id AnatomicalEntity : name AnatomicalEntity : related_to AnatomicalEntity ..> NamedThing : related_to AnatomicalEntity : subclass_of AnatomicalEntity ..> NamedThing : subclass_of

Inheritance

Slots

Name Cardinality and Range Description Inheritance
id 1..1
Uriorcurie		 A unique identifier for a thing NamedThing
category 0..1
CategoryType		 Name of the high level ontology class in which this entity is categorized NamedThing
name 0..1
String		 A human-readable name for a thing NamedThing
description 0..1
String		 A human-readable description for a thing NamedThing
subclass_of 0..*
NamedThing		 Holds between two classes where the domain class is a specialization of the r... NamedThing
related_to 0..*
NamedThing		 A relationship that is asserted between two named things NamedThing
contributor_name 0..1
String		 The name of the person who added this node NamedThing
contributor_github_name 0..1
String		 The name of the github user who added this node NamedThing
contributor_orcid 0..1
Uriorcurie		 The ORCiD of the person who added this node NamedThing
contribution_date 0..1
Date		 The date on which the node was added NamedThing

Usages

used by used in type used
DataTopic topic_involves_anatomy range AnatomicalEntity

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

  • uberon

Schema Source

  • from schema: https://w3id.org/bridge2ai/standards-schema-all

Mappings

Mapping Type Mapped Value
self https://w3id.org/bridge2ai/standards-schema-all/:AnatomicalEntity
native https://w3id.org/bridge2ai/standards-schema-all/:AnatomicalEntity
exact uberon:0001062, wikidata:Q4936952
narrow ncit:C12219

LinkML Source

Direct

name: AnatomicalEntity
id_prefixes:
- uberon
description: A subcellular location, cell type or gross anatomical part
from_schema: https://w3id.org/bridge2ai/standards-schema-all
exact_mappings:
- uberon:0001062
- wikidata:Q4936952
narrow_mappings:
- ncit:C12219
rank: 1000
is_a: NamedThing

Induced

name: AnatomicalEntity
id_prefixes:
- uberon
description: A subcellular location, cell type or gross anatomical part
from_schema: https://w3id.org/bridge2ai/standards-schema-all
exact_mappings:
- uberon:0001062
- wikidata:Q4936952
narrow_mappings:
- ncit:C12219
rank: 1000
is_a: NamedThing
attributes:
  id:
    name: id
    description: A unique identifier for a thing.
    from_schema: https://w3id.org/bridge2ai/standards-schema-all
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: AnatomicalEntity
    domain_of:
    - NamedThing
    range: uriorcurie
    required: true
  category:
    name: category
    description: Name of the high level ontology class in which this entity is categorized.
      Corresponds to the label for the entity type class, e.g., "BiomedicalStandard".
    from_schema: https://w3id.org/bridge2ai/standards-schema-all
    rank: 1000
    is_a: type
    domain: NamedThing
    designates_type: true
    alias: category
    owner: AnatomicalEntity
    domain_of:
    - NamedThing
    range: category_type
  name:
    name: name
    description: A human-readable name for a thing.
    from_schema: https://w3id.org/bridge2ai/standards-schema-all
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: AnatomicalEntity
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: A human-readable description for a thing.
    from_schema: https://w3id.org/bridge2ai/standards-schema-all
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: AnatomicalEntity
    domain_of:
    - NamedThing
    range: string
  subclass_of:
    name: subclass_of
    description: Holds between two classes where the domain class is a specialization
      of the range class.
    from_schema: https://w3id.org/bridge2ai/standards-schema-all
    exact_mappings:
    - rdfs:subClassOf
    - MESH:isa
    narrow_mappings:
    - rdfs:subPropertyOf
    rank: 1000
    is_a: related_to
    domain: NamedThing
    multivalued: true
    inherited: true
    alias: subclass_of
    owner: AnatomicalEntity
    domain_of:
    - NamedThing
    range: NamedThing
  related_to:
    name: related_to
    description: A relationship that is asserted between two named things.
    from_schema: https://w3id.org/bridge2ai/standards-schema-all
    rank: 1000
    domain: NamedThing
    multivalued: true
    inherited: true
    alias: related_to
    owner: AnatomicalEntity
    domain_of:
    - NamedThing
    - Organization
    symmetric: true
    range: NamedThing
  contributor_name:
    name: contributor_name
    description: The name of the person who added this node.
    from_schema: https://w3id.org/bridge2ai/standards-schema-all
    rank: 1000
    is_a: node_property
    domain: NamedThing
    alias: contributor_name
    owner: AnatomicalEntity
    domain_of:
    - NamedThing
    range: string
  contributor_github_name:
    name: contributor_github_name
    description: The name of the github user who added this node.
    from_schema: https://w3id.org/bridge2ai/standards-schema-all
    rank: 1000
    is_a: node_property
    domain: NamedThing
    alias: contributor_github_name
    owner: AnatomicalEntity
    domain_of:
    - NamedThing
    range: string
  contributor_orcid:
    name: contributor_orcid
    description: The ORCiD of the person who added this node.
    examples:
    - value: ORCID:0000-0001-1234-5678
    from_schema: https://w3id.org/bridge2ai/standards-schema-all
    rank: 1000
    is_a: node_property
    domain: NamedThing
    alias: contributor_orcid
    owner: AnatomicalEntity
    domain_of:
    - NamedThing
    range: uriorcurie
  contribution_date:
    name: contribution_date
    description: The date on which the node was added.
    examples:
    - value: '2023-03-20'
    from_schema: https://w3id.org/bridge2ai/standards-schema-all
    rank: 1000
    is_a: node_property
    domain: NamedThing
    alias: contribution_date
    owner: AnatomicalEntity
    domain_of:
    - NamedThing
    range: date