Class: DataTopic

Represents a general data topic for Bridge2AI data or the tools/standards applied to the data.

URI: https://w3id.org/bridge2ai/standards-schema-all/:DataTopic

classDiagram class DataTopic NamedThing <|-- DataTopic DataTopic : category DataTopic : contribution_date DataTopic : contributor_github_name DataTopic : contributor_name DataTopic : contributor_orcid DataTopic : description DataTopic : edam_id DataTopic : id DataTopic : mesh_id DataTopic : name DataTopic : ncit_id DataTopic : related_to DataTopic ..> NamedThing : related_to DataTopic : subclass_of DataTopic ..> NamedThing : subclass_of DataTopic : topic_involves_anatomy DataTopic ..> AnatomicalEntity : topic_involves_anatomy

Inheritance

NamedThing
- DataTopic

Slots

Name	Cardinality and Range	Description	Inheritance
edam_id	0..1 EdamIdentifier	Unique EDAM identifier	direct
mesh_id	0..1 MeshIdentifier	Unique MeSH identifier	direct
ncit_id	0..1 NcitIdentifier	Unique NCIt Identifier	direct
topic_involves_anatomy	0..* AnatomicalEntity	A relationship between a DataTopic and an anatomical entity	direct
id	1..1 Uriorcurie	A unique identifier for a thing	NamedThing
category	0..1 CategoryType	Name of the high level ontology class in which this entity is categorized	NamedThing
name	0..1 String	A human-readable name for a thing	NamedThing
description	0..1 String	A human-readable description for a thing	NamedThing
subclass_of	0..* NamedThing	Holds between two classes where the domain class is a specialization of the r...	NamedThing
related_to	0..* NamedThing	A relationship that is asserted between two named things	NamedThing
contributor_name	0..1 String	The name of the person who added this node	NamedThing
contributor_github_name	0..1 String	The name of the github user who added this node	NamedThing
contributor_orcid	0..1 Uriorcurie	The ORCiD of the person who added this node	NamedThing
contribution_date	0..1 Date	The date on which the node was added	NamedThing

Usages

used by	used in	type	used
UseCase	data_topics	range	DataTopic
DataStandardOrTool	concerns_data_topic	range	DataTopic
DataStandard	concerns_data_topic	range	DataTopic
BiomedicalStandard	concerns_data_topic	range	DataTopic
Registry	concerns_data_topic	range	DataTopic
OntologyOrVocabulary	concerns_data_topic	range	DataTopic
ModelRepository	concerns_data_topic	range	DataTopic
ReferenceDataOrDataset	concerns_data_topic	range	DataTopic
SoftwareOrTool	concerns_data_topic	range	DataTopic
ReferenceImplementation	concerns_data_topic	range	DataTopic
TrainingProgram	concerns_data_topic	range	DataTopic
DataTopic	topic_involves_anatomy	domain	DataTopic
DataTopicContainer	data_topics_collection	range	DataTopic

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/bridge2ai/standards-schema-all

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/bridge2ai/standards-schema-all/:DataTopic
native	https://w3id.org/bridge2ai/standards-schema-all/:DataTopic

LinkML Source

Direct

name: DataTopic
description: Represents a general data topic for Bridge2AI data or the tools/standards
  applied to the data.
from_schema: https://w3id.org/bridge2ai/standards-schema-all
rank: 1000
is_a: NamedThing
slots:
- edam_id
- mesh_id
- ncit_id
- topic_involves_anatomy

Induced

name: DataTopic
description: Represents a general data topic for Bridge2AI data or the tools/standards
  applied to the data.
from_schema: https://w3id.org/bridge2ai/standards-schema-all
rank: 1000
is_a: NamedThing
attributes:
  edam_id:
    name: edam_id
    description: Unique EDAM identifier
    examples:
    - value: edam.data:0006
    from_schema: https://w3id.org/bridge2ai/standards-schema-all
    rank: 1000
    values_from:
    - edam.data
    - edam.format
    - edam.operation
    - edam.topic
    alias: edam_id
    owner: DataTopic
    domain_of:
    - DataTopic
    - DataSubstrate
    range: edam_identifier
  mesh_id:
    name: mesh_id
    description: Unique MeSH identifier
    examples:
    - value: MeSH:D014831
    from_schema: https://w3id.org/bridge2ai/standards-schema-all
    rank: 1000
    values_from:
    - MeSH
    alias: mesh_id
    owner: DataTopic
    domain_of:
    - DataTopic
    - DataSubstrate
    range: mesh_identifier
  ncit_id:
    name: ncit_id
    description: Unique NCIt Identifier
    examples:
    - value: NCIT:C92692
    from_schema: https://w3id.org/bridge2ai/standards-schema-all
    rank: 1000
    values_from:
    - NCIT
    alias: ncit_id
    owner: DataTopic
    domain_of:
    - DataTopic
    - DataSubstrate
    range: ncit_identifier
  topic_involves_anatomy:
    name: topic_involves_anatomy
    description: A relationship between a DataTopic and an anatomical entity.
    from_schema: https://w3id.org/bridge2ai/standards-schema-all
    exact_mappings:
    - RO:0004026
    rank: 1000
    is_a: related_to
    domain: DataTopic
    multivalued: true
    inherited: true
    alias: topic_involves_anatomy
    owner: DataTopic
    domain_of:
    - DataTopic
    range: AnatomicalEntity
  id:
    name: id
    description: A unique identifier for a thing.
    from_schema: https://w3id.org/bridge2ai/standards-schema-all
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: DataTopic
    domain_of:
    - NamedThing
    range: uriorcurie
    required: true
  category:
    name: category
    description: Name of the high level ontology class in which this entity is categorized.
      Corresponds to the label for the entity type class, e.g., "BiomedicalStandard".
    from_schema: https://w3id.org/bridge2ai/standards-schema-all
    rank: 1000
    is_a: type
    domain: NamedThing
    designates_type: true
    alias: category
    owner: DataTopic
    domain_of:
    - NamedThing
    range: category_type
  name:
    name: name
    description: A human-readable name for a thing.
    from_schema: https://w3id.org/bridge2ai/standards-schema-all
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: DataTopic
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: A human-readable description for a thing.
    from_schema: https://w3id.org/bridge2ai/standards-schema-all
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: DataTopic
    domain_of:
    - NamedThing
    range: string
  subclass_of:
    name: subclass_of
    description: Holds between two classes where the domain class is a specialization
      of the range class.
    from_schema: https://w3id.org/bridge2ai/standards-schema-all
    exact_mappings:
    - rdfs:subClassOf
    - MESH:isa
    narrow_mappings:
    - rdfs:subPropertyOf
    rank: 1000
    is_a: related_to
    domain: NamedThing
    multivalued: true
    inherited: true
    alias: subclass_of
    owner: DataTopic
    domain_of:
    - NamedThing
    range: NamedThing
  related_to:
    name: related_to
    description: A relationship that is asserted between two named things.
    from_schema: https://w3id.org/bridge2ai/standards-schema-all
    rank: 1000
    domain: NamedThing
    multivalued: true
    inherited: true
    alias: related_to
    owner: DataTopic
    domain_of:
    - NamedThing
    - Organization
    symmetric: true
    range: NamedThing
  contributor_name:
    name: contributor_name
    description: The name of the person who added this node.
    from_schema: https://w3id.org/bridge2ai/standards-schema-all
    rank: 1000
    is_a: node_property
    domain: NamedThing
    alias: contributor_name
    owner: DataTopic
    domain_of:
    - NamedThing
    range: string
  contributor_github_name:
    name: contributor_github_name
    description: The name of the github user who added this node.
    from_schema: https://w3id.org/bridge2ai/standards-schema-all
    rank: 1000
    is_a: node_property
    domain: NamedThing
    alias: contributor_github_name
    owner: DataTopic
    domain_of:
    - NamedThing
    range: string
  contributor_orcid:
    name: contributor_orcid
    description: The ORCiD of the person who added this node.
    examples:
    - value: ORCID:0000-0001-1234-5678
    from_schema: https://w3id.org/bridge2ai/standards-schema-all
    rank: 1000
    is_a: node_property
    domain: NamedThing
    alias: contributor_orcid
    owner: DataTopic
    domain_of:
    - NamedThing
    range: uriorcurie
  contribution_date:
    name: contribution_date
    description: The date on which the node was added.
    examples:
    - value: '2023-03-20'
    from_schema: https://w3id.org/bridge2ai/standards-schema-all
    rank: 1000
    is_a: node_property
    domain: NamedThing
    alias: contribution_date
    owner: DataTopic
    domain_of:
    - NamedThing
    range: date