Class: ModelRepository
Represents a resource in the Bridge2AI Standards Registry serving to curate and store computational models. To be a repository, the resource must not index models alone.
URI: https://w3id.org/bridge2ai/standards-schema-all/ModelRepository
classDiagram
class ModelRepository
click ModelRepository href "../ModelRepository/"
DataStandardOrTool <|-- ModelRepository
click DataStandardOrTool href "../DataStandardOrTool/"
ModelRepository : category
ModelRepository : collection
ModelRepository --> "*" StandardsCollectionTag : collection
click StandardsCollectionTag href "../StandardsCollectionTag/"
ModelRepository : concerns_data_topic
ModelRepository --> "*" DataTopic : concerns_data_topic
click DataTopic href "../DataTopic/"
ModelRepository : contribution_date
ModelRepository : contributor_github_name
ModelRepository : contributor_name
ModelRepository : contributor_orcid
ModelRepository : description
ModelRepository : formal_specification
ModelRepository : has_application
ModelRepository --> "*" Application : has_application
click Application href "../Application/"
ModelRepository : has_relevant_data_substrate
ModelRepository --> "*" DataSubstrate : has_relevant_data_substrate
click DataSubstrate href "../DataSubstrate/"
ModelRepository : has_relevant_organization
ModelRepository --> "*" Organization : has_relevant_organization
click Organization href "../Organization/"
ModelRepository : has_training_resource
ModelRepository --> "*" DataStandardOrTool : has_training_resource
click DataStandardOrTool href "../DataStandardOrTool/"
ModelRepository : id
ModelRepository : is_open
ModelRepository : name
ModelRepository : publication
ModelRepository : purpose_detail
ModelRepository : related_to
ModelRepository --> "*" NamedThing : related_to
click NamedThing href "../NamedThing/"
ModelRepository : requires_registration
ModelRepository : responsible_organization
ModelRepository --> "*" Organization : responsible_organization
click Organization href "../Organization/"
ModelRepository : subclass_of
ModelRepository --> "*" NamedThing : subclass_of
click NamedThing href "../NamedThing/"
ModelRepository : url
ModelRepository : used_in_bridge2ai
Inheritance
- NamedThing
- DataStandardOrTool
- ModelRepository
- DataStandardOrTool
Slots
| Name | Cardinality and Range | Description | Inheritance |
|---|---|---|---|
| collection | * StandardsCollectionTag |
Tags for specific sets of standards | DataStandardOrTool |
| concerns_data_topic | * DataTopic |
Subject standard is generally applied in the context of object data topic | DataStandardOrTool |
| has_relevant_organization | * Organization |
Subject standard has some relationship to the object organization(s), includi... | DataStandardOrTool |
| has_training_resource | * DataStandardOrTool |
Relevant training resources, standard usage manuals, or other documentation f... | DataStandardOrTool |
| purpose_detail | 0..1 String |
Text description of the standard or tool | DataStandardOrTool |
| is_open | 0..1 Boolean |
Is the standard or tool FAIR and available free of cost? | DataStandardOrTool |
| requires_registration | 0..1 Boolean |
Does usage of the standard or tool require registration of a user or group wi... | DataStandardOrTool |
| url | 0..1 Uriorcurie |
URL for basic documentation of the standard or tool | DataStandardOrTool |
| publication | 0..1 Uriorcurie |
Relevant publication for the standard or tool | DataStandardOrTool |
| formal_specification | 0..1 Uriorcurie |
Relevant code repository or other location for a formal specification of the ... | DataStandardOrTool |
| responsible_organization | * Organization |
Organization(s) responsible for providing and/or supporting the standard or t... | DataStandardOrTool |
| has_relevant_data_substrate | * DataSubstrate |
Subject standard has some relationship to the object data substrate(s), inclu... | DataStandardOrTool |
| id | 1 Uriorcurie |
A unique identifier for a thing | NamedThing |
| category | 0..1 CategoryType |
CURIE for the high level ontology class in which this entity is categorized | NamedThing |
| name | 0..1 String |
A human-readable name for a thing | NamedThing |
| description | 0..1 String |
A human-readable description for a thing | NamedThing |
| subclass_of | * NamedThing |
Holds between two classes where the domain class is a specialization of the r... | NamedThing |
| related_to | * NamedThing |
A relationship that is asserted between two named things | NamedThing |
| contributor_name | 0..1 String |
The name of the person who added this node | NamedThing |
| contributor_github_name | 0..1 String |
The name of the github user who added this node | NamedThing |
| contributor_orcid | 0..1 Uriorcurie |
The ORCiD of the person who added this node | NamedThing |
| contribution_date | 0..1 Date |
The date on which the node was added | NamedThing |
| used_in_bridge2ai | 0..1 Boolean |
True if the entity is used, developed, or otherwise related to work in the Br... | NamedThing |
| has_application | * Application |
A list of one or more specific applications of this entity to a specific purp... | NamedThing |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/bridge2ai/standards-schema-all
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | https://w3id.org/bridge2ai/standards-schema-all/ModelRepository |
| native | https://w3id.org/bridge2ai/standards-schema-all/ModelRepository |
LinkML Source
Direct
name: ModelRepository
description: Represents a resource in the Bridge2AI Standards Registry serving to
curate and store computational models. To be a repository, the resource must not
index models alone.
from_schema: https://w3id.org/bridge2ai/standards-schema-all
is_a: DataStandardOrTool
Induced
name: ModelRepository
description: Represents a resource in the Bridge2AI Standards Registry serving to
curate and store computational models. To be a repository, the resource must not
index models alone.
from_schema: https://w3id.org/bridge2ai/standards-schema-all
is_a: DataStandardOrTool
attributes:
collection:
name: collection
description: Tags for specific sets of standards.
from_schema: https://w3id.org/bridge2ai/standards-schema-all
rank: 1000
is_a: node_property
domain: NamedThing
alias: collection
owner: ModelRepository
domain_of:
- DataStandardOrTool
range: StandardsCollectionTag
multivalued: true
concerns_data_topic:
name: concerns_data_topic
description: Subject standard is generally applied in the context of object data
topic.
from_schema: https://w3id.org/bridge2ai/standards-schema-all
rank: 1000
is_a: related_to
domain: DataStandardOrTool
inherited: true
alias: concerns_data_topic
owner: ModelRepository
domain_of:
- DataStandardOrTool
range: DataTopic
multivalued: true
has_relevant_organization:
name: has_relevant_organization
description: Subject standard has some relationship to the object organization(s),
including as a user. This is distinct from the responsible organization, which
is the group providing or supporting the standard or tool.
from_schema: https://w3id.org/bridge2ai/standards-schema-all
rank: 1000
is_a: related_to
domain: DataStandardOrTool
inherited: true
alias: has_relevant_organization
owner: ModelRepository
domain_of:
- DataStandardOrTool
range: Organization
multivalued: true
has_training_resource:
name: has_training_resource
description: Relevant training resources, standard usage manuals, or other documentation
for the standard or tool.
from_schema: https://w3id.org/bridge2ai/standards-schema-all
rank: 1000
is_a: node_property
domain: NamedThing
alias: has_training_resource
owner: ModelRepository
domain_of:
- DataStandardOrTool
range: DataStandardOrTool
multivalued: true
purpose_detail:
name: purpose_detail
description: Text description of the standard or tool.
from_schema: https://w3id.org/bridge2ai/standards-schema-all
rank: 1000
is_a: node_property
domain: NamedThing
alias: purpose_detail
owner: ModelRepository
domain_of:
- DataStandardOrTool
range: string
is_open:
name: is_open
description: Is the standard or tool FAIR and available free of cost?
from_schema: https://w3id.org/bridge2ai/standards-schema-all
rank: 1000
is_a: node_property
domain: NamedThing
alias: is_open
owner: ModelRepository
domain_of:
- DataStandardOrTool
range: boolean
requires_registration:
name: requires_registration
description: Does usage of the standard or tool require registration of a user
or group with some organization or managerial body?
from_schema: https://w3id.org/bridge2ai/standards-schema-all
rank: 1000
is_a: node_property
domain: NamedThing
alias: requires_registration
owner: ModelRepository
domain_of:
- DataStandardOrTool
range: boolean
url:
name: url
description: URL for basic documentation of the standard or tool.
from_schema: https://w3id.org/bridge2ai/standards-schema-all
rank: 1000
is_a: node_property
domain: NamedThing
alias: url
owner: ModelRepository
domain_of:
- DataStandardOrTool
- Organization
range: uriorcurie
publication:
name: publication
description: Relevant publication for the standard or tool. Prefer a DOI or PUBMED.
from_schema: https://w3id.org/bridge2ai/standards-schema-all
rank: 1000
is_a: node_property
domain: NamedThing
alias: publication
owner: ModelRepository
domain_of:
- DataStandardOrTool
range: uriorcurie
formal_specification:
name: formal_specification
description: Relevant code repository or other location for a formal specification
of the standard or tool. Often a URL, particularly to a Git repository.
from_schema: https://w3id.org/bridge2ai/standards-schema-all
rank: 1000
is_a: node_property
domain: NamedThing
alias: formal_specification
owner: ModelRepository
domain_of:
- DataStandardOrTool
range: uriorcurie
responsible_organization:
name: responsible_organization
description: Organization(s) responsible for providing and/or supporting the standard
or tool.
from_schema: https://w3id.org/bridge2ai/standards-schema-all
rank: 1000
is_a: node_property
domain: DataStandardOrTool
alias: responsible_organization
owner: ModelRepository
domain_of:
- DataStandardOrTool
range: Organization
multivalued: true
has_relevant_data_substrate:
name: has_relevant_data_substrate
description: Subject standard has some relationship to the object data substrate(s),
including whether it is intended to be used with the data substrate, or whether
it is implemented through the data substrate.
from_schema: https://w3id.org/bridge2ai/standards-schema-all
rank: 1000
is_a: related_to
domain: DataStandardOrTool
inherited: true
alias: has_relevant_data_substrate
owner: ModelRepository
domain_of:
- DataStandardOrTool
range: DataSubstrate
multivalued: true
id:
name: id
description: A unique identifier for a thing.
from_schema: https://w3id.org/bridge2ai/standards-schema-all
rank: 1000
slot_uri: schema:identifier
identifier: true
alias: id
owner: ModelRepository
domain_of:
- NamedThing
range: uriorcurie
required: true
category:
name: category
description: CURIE for the high level ontology class in which this entity is categorized.
Corresponds to the label for the entity type class, e.g., "B2AI_STANDARD:DataStandard".
from_schema: https://w3id.org/bridge2ai/standards-schema-all
rank: 1000
is_a: type
domain: NamedThing
designates_type: true
alias: category
owner: ModelRepository
domain_of:
- NamedThing
range: category_type
name:
name: name
description: A human-readable name for a thing.
from_schema: https://w3id.org/bridge2ai/standards-schema-all
rank: 1000
slot_uri: schema:name
alias: name
owner: ModelRepository
domain_of:
- NamedThing
range: string
description:
name: description
description: A human-readable description for a thing.
from_schema: https://w3id.org/bridge2ai/standards-schema-all
rank: 1000
slot_uri: schema:description
alias: description
owner: ModelRepository
domain_of:
- NamedThing
range: string
subclass_of:
name: subclass_of
description: Holds between two classes where the domain class is a specialization
of the range class.
from_schema: https://w3id.org/bridge2ai/standards-schema-all
exact_mappings:
- rdfs:subClassOf
- MESH:isa
narrow_mappings:
- rdfs:subPropertyOf
rank: 1000
is_a: related_to
domain: NamedThing
inherited: true
alias: subclass_of
owner: ModelRepository
domain_of:
- NamedThing
range: NamedThing
multivalued: true
related_to:
name: related_to
description: A relationship that is asserted between two named things.
from_schema: https://w3id.org/bridge2ai/standards-schema-all
rank: 1000
domain: NamedThing
inherited: true
alias: related_to
owner: ModelRepository
domain_of:
- NamedThing
- Organization
symmetric: true
range: NamedThing
multivalued: true
contributor_name:
name: contributor_name
description: The name of the person who added this node.
from_schema: https://w3id.org/bridge2ai/standards-schema-all
rank: 1000
is_a: node_property
domain: NamedThing
alias: contributor_name
owner: ModelRepository
domain_of:
- NamedThing
range: string
contributor_github_name:
name: contributor_github_name
description: The name of the github user who added this node.
from_schema: https://w3id.org/bridge2ai/standards-schema-all
rank: 1000
is_a: node_property
domain: NamedThing
alias: contributor_github_name
owner: ModelRepository
domain_of:
- NamedThing
range: string
contributor_orcid:
name: contributor_orcid
description: The ORCiD of the person who added this node.
examples:
- value: ORCID:0000-0001-1234-5678
from_schema: https://w3id.org/bridge2ai/standards-schema-all
rank: 1000
is_a: node_property
domain: NamedThing
alias: contributor_orcid
owner: ModelRepository
domain_of:
- NamedThing
range: uriorcurie
contribution_date:
name: contribution_date
description: The date on which the node was added.
examples:
- value: '2023-03-20'
from_schema: https://w3id.org/bridge2ai/standards-schema-all
rank: 1000
is_a: node_property
domain: NamedThing
alias: contribution_date
owner: ModelRepository
domain_of:
- NamedThing
range: date
used_in_bridge2ai:
name: used_in_bridge2ai
description: True if the entity is used, developed, or otherwise related to work
in the Bridge2AI consortium. If false, the entity is not explicitly related
to Bridge2AI. If not specified, it is not known if the entity is related to
Bridge2AI.
from_schema: https://w3id.org/bridge2ai/standards-schema-all
rank: 1000
is_a: node_property
domain: NamedThing
alias: used_in_bridge2ai
owner: ModelRepository
domain_of:
- NamedThing
range: boolean
has_application:
name: has_application
description: A list of one or more specific applications of this entity to a specific
purpose.
from_schema: https://w3id.org/bridge2ai/standards-schema-all
rank: 1000
domain: NamedThing
alias: has_application
owner: ModelRepository
domain_of:
- NamedThing
range: Application
multivalued: true
inlined: true
inlined_as_list: true